Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs336592 chr3:161077186 T/C 1.11E-16 173 25.87 19.85 1.63 KM Plot
PCPG rs33934962 chr8:126141595 AAC/A 8.16E-9 175 25.28 28.3 3.67 KM Plot
PCPG rs33972312 chr2:24308872 A/G 0.000118 177 25.28 26.57 17.43 KM Plot
PCPG rs33983199 chr14:74627713 A/T 1.79E-5 178 10.43 27.27 25.4 KM Plot
PCPG rs33998519 chr19:15412007 T/C 6.91E-7 174 25.47 21.12 10.68 KM Plot
PCPG rs34002193 chr12:31786920 C/CA 0.000291 178 24.6 27.95 16.83 KM Plot
PCPG rs34003621 chr3:80557350 C/CA 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs34015581 chr16:71508229 T/A 0 176 25.17 25.27 3.17 KM Plot
PCPG rs34018329 chr2:24310865 G/A 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs34026405 chr14:74643733 C/T 0.000221 176 25.28 26.57 10.57 KM Plot
PCPG rs34027780 chr5:179478891 C/A 0.000238 176 24.17 29.95 14.83 KM Plot
PCPG rs34031668 chr2:242533379 T/C 4.16E-5 177 25.87 27.27 20.2 KM Plot
PCPG rs34033205 chr16:89922959 G/T 0.000185 172 25.87 23.37 36.37 KM Plot
PCPG rs34040967 chr5:171531685 CGCT/C 0.000114 177 25.87 22.3 17.12 KM Plot
PCPG rs34058768 chr2:239110446 GAA/G 2.92E-5 170 29.43 18.2 13.22 KM Plot